Journal Club

2020 Jan-Feb Journal club

1. [Suji] Lai, F., Damle, S., Ling, K., Rigo, F. (2020). Directed RNase H Cleavage of Nascent Transcripts Causes Transcription Termination Molecular Cell 

2. [Min-Kyu] Sen, I., Zhou, X., Chernobrovkin, A., Puerta-Cavanzo, N., Kanno, T., Salignon, J., Stoehr, A., Lin, X., Baskaner, B., Brandenburg, S., Björkegren, C., Zubarev, R., Riedel, C. (2020). DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes Nature Communications  11(1), 138.

3. [Hong-Yeoul] Lee, J., Mendell, J. (2020). Antisense-Mediated Transcript Knockdown Triggers Premature Transcription Termination Molecular Cell 

4. [Tsogoo] Huang, H., Weng, H., Zhou, K., Wu, T., Zhao, B., Sun, M., Chen, Z., Deng, X., Xiao, G., Auer, F., Klemm, L., Wu, H., Zuo, Z., Qin, X., Dong, Y., Zhou, Y., Qin, H., Tao, S., Du, J., Liu, J., Lu, Z., Yin, H., Mesquita, A., Yuan, C., Hu, Y., Sun, W., Su, R., Dong, L., Shen, C., Li, C., Qing, Y., Jiang, X., Wu, X., Sun, M., Guan, J., Qu, L., Wei, M., Müschen, M., Huang, G., He, C., Yang, J., Chen, J. (2019). Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally. Nature  429(7748), 457 - 419. 

5. [Seong-Hoon] Lu, H., Yu, D., Hansen, A. S., Ganguly, S., Liu, R., Heckert, A., et al. (2018). Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II. Nature, 558(7709), 318–323. 

6. {Yan] Guerrero, A., Herranz, N., Bin Sun, Wagner, V., Gallage, S., Guiho, R., et al. (2019). Cardiac glycosides are broad-spectrum senolytics. Nature Metabolism, 1(11), 1074–1088. 

7. [Se-Jeong] Bussian, T. J., Aziz, A., Meyer, C. F., Swenson, B. L., van Deursen, J. M., & Baker, D. J. (2018). Clearance of senescent glial cells prevents tau-dependent pathology and cognitive decline. Nature, 562(7728), 578–582.

Please download the listed paper(s) and read them before your attendance. Comments on each presentation would be welcome.

2013 summer journal club is scheduled on every Tuesday of July and August. Please take a look at the lists of the papers below and choose one paper you want to present. The order of presentation will be informed later via 'Twitter'. I hope all of you could have insight into your own projects through this journal club.

2013 Summer

  1. Huang, J., Brito, I.L., Villén, J., Gygi, S.P., Amon, A., and Moazed, D. (2006). Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer. Genes & development 20, 2887-2901.
  2. Waples, W.G., Chahwan, C., Ciechonska, M., and Lavoie, B.D. (2009). Putting the brake on FEAR: Tof2 promotes the biphasic release of Cdc14 phosphatase during mitotic exit. Molecular biology of the cell 20, 245-255.
  3. Geil, C., Schwab, M., and Seufert, W. (2008). A nucleolus-localized activator of Cdc14 phosphatase supports rDNA segregation in yeast mitosis. Current biology 18, 1001-1005.
  4. Johzuka, K., and Horiuchi, T. (2009). The< i> cis</i> Element and Factors Required for Condensin Recruitment to Chromosomes. Molecular cell 34, 26-35.
  5. Di Felice, F., Cioci, F., and Camilloni, G. (2005). FOB1 affects DNA topoisomerase I in vivo cleavages in the enhancer region of the Saccharomyces cerevisiae ribosomal DNA locus. Nucleic acids research 33, 6327-6337.
  6. Saguez, C., Schmid, M., Olesen, J.R., Ghazy, M.A.E.-H., Qu, X., Poulsen, M.B., Nasser, T., Moore, C., and Jensen, T.H. (2008). Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation. Molecular cell 31, 91-103.
  7. Zhu, X., Liu, B., Carlsten, J.O., Beve, J., Nyström, T., Myers, L.C., and Gustafsson, C.M. (2011). Mediator influences telomeric silencing and cellular life span. Molecular and cellular biology 31, 2413-2421.
  8. García-Oliver, E., Pascual-García, P., García-Molinero, V., Lenstra, T.L., Holstege, F.C., and Rodríguez-Navarro, S. (2013). A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA. Nucleic acids research 41, 5655-5668.
  9. Sermwittayawong, D., and Tan, S. (2006). SAGA binds TBP via its Spt8 subunit in competition with DNA: implications for TBP recruitment. The EMBO journal 25, 3791-3800.
  10. Jacobson, S., and Pillus, L. (2009). The SAGA subunit Ada2 functions in transcriptional silencing. Molecular and cellular biology 29, 6033-6045.
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